The Kerala State Higher Education Council (KSHEC) operates under a structured governance system to ensure effective planning, coordination, and development of higher education in the state.

• The Hon’ble Governor of Kerala serves as the Patron of the Council.
• The Hon’ble Chief Minister of Kerala acts as the Visitor of the Council.
• The Hon’ble Minister for Higher Education serves as the Chairperson of the Council.
• The Vice Chairman, an eminent educationist (preferably a former Vice Chancellor), is appointed by the Government as the executive head of the Council.
• The Member Secretary, an academician with administrative experience, is appointed by the Government.
• The Registrar, an officer of the rank of Joint Secretary or above, is appointed by the Government on deputation.

KSHEC follows a three-tier structure comprising:

• Advisory Body
• Governing Body
• Executive Body

The Council is constituted by the Government for a term of four years.